FunGAP report

Created at 2023-04-13

The 9,503 genes were predicted in this genome.

1. Gene structure

Attributes Values
Total protein-coding genes 9,503
Transcript length (avg / med) 1,885.1 / 1,568.0
CDS length (avg / med) 1,544.4 / 1,260.0
Protein length (avg / med) 514.8 / 420.0
Exon length (avg / med) 250.5 / 145.0
Intron length (avg / med) 65.9 / 55.0
Spliced genes 8,924 (93.91%)
Gene density (genes/Mb) 361.25
Number of introns 49,091
Number of introns per gene (med) 4.0
Number of exons 58,594
Number of exons per gene (med) 5.0

2. Transcriptome reads assembly

Attributes Values
Number of mapped reads 144,050,842
Number of assembled contigs 33,575
Number of contigs > 1 kbp 25,518
Total transcript size (Mbp) 81,816,921

3. Transcript length distribution

Transcript length distribution


4. Protein length distribution

Protein length distribution