FunGAP report

Created at 2023-04-14

The 8,263 genes were predicted in this genome.

1. Gene structure

Attributes Values
Total protein-coding genes 8,263
Transcript length (avg / med) 1,493.2 / 1,233.0
CDS length (avg / med) 1,476.1 / 1,221.0
Protein length (avg / med) 492.0 / 407.0
Exon length (avg / med) 1,382.7 / 1,149.0
Intron length (avg / med) 253.0 / 133.0
Spliced genes 522 (6.32%)
Gene density (genes/Mb) 440.23
Number of introns 558
Number of introns per gene (med) 1.0
Number of exons 8,821
Number of exons per gene (med) 1.0

2. Transcriptome reads assembly

Attributes Values
Number of mapped reads 137,568,322
Number of assembled contigs 20,373
Number of contigs > 1 kbp 4,548
Total transcript size (Mbp) 15,414,121

3. Transcript length distribution

Transcript length distribution


4. Protein length distribution

Protein length distribution